[pymvpa] py27-pymvpa: build error

[David Soto]

hi, in that case try this one
git clone https://github.com/PyMVPA/PyMVPA
and continue the recipe given
hth
david
On 22 June 2016 at 22:42, Yun-Ta Tsai <andytsai at mit.edu> wrote:

> when i tried cloning git with your recipe, it showed this:
>
> Cloning into 'PyMVPA'...
> fatal: unable to connect to github.com:
> github.com[0: 192.30.252.121]: errno=Operation timed out
>
> however, when I checked
> macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-pymvpa
> I find a pymvpa folder that seems to have the files. I attached the
> screenshot.
>
> however when i try to import mvpa2 into python it shows that no such
> module exists. where do i put the MVPA folder containing all the files in
> order for python to be able to import?
>
> thanks in advance!
>
> ------------------------------
> *From:* Pkg-ExpPsy-PyMVPA [pkg-exppsy-pymvpa-bounces+andytsai=
> mit.edu at lists.alioth.debian.org] on behalf of David Soto [
> d.soto.b at gmail.com]
> *Sent:* Wednesday, June 22, 2016 4:25 PM
> *To:* Development and support of PyMVPA
> *Subject:* Re: [pymvpa] py27-pymvpa: build error
>
> Hi, I had trouble with macports, but was able to install all dependencias
> and PyMVPA via hombrew and pip
>
> this is my recipe in case you would like to try it out, it works on my Mac
> with el Capitan
>
> best
> david
> _________________________________________________________________
> #  Install command line tools
>
> xcode-select --install
>
> _________________________________________________________________
> # Installing Brew
> /usr/bin/ruby -e "$(curl -fsSL
> https://raw.githubusercontent.com/Homebrew/install/master/install)"
> _________________________________________________________________
> # Set up some taps and update brew
> brew tap homebrew/science
> brew tap homebrew/python
> brew update && brew upgrade
> _________________________________________________________________
> # Install a brewed python
> brew install python
>
> _________________________________________________________________
> #Install numpy, cython and h5py and scipy
> pip install numpy
> pip install scipy
> pip install cython
> brew install hdf5
> pip install h5py
> pip install nipy
>
> #Install matplotlib with cairo support for png, ps, pdf and svg files
> brew install matplotlib --with-cairo
> _________________________________________________________________
> #Relink numpy to brew as it was installed with pip
> brew link --overwrite numpy
> _________________________________________________________________
> #Install Pandas
> pip install pandas
> _________________________________________________________________
> #Install ipython with parallel and notebook support
> brew install zmq
> pip install ipython[all]
> _________________________________________________________________
> #install IDE ninja
> pip install macfsevents
> brew install ninja-ide
> _________________________________________________________________
> pip install -U scikit-learn
> _________________________________________________________________
> #PYMVPA
> pip install nibabel
> brew install swig
>
> _________________________________________________________________
> #Download PYMVPA from github and extract
> git clone git://github.com/PyMVPA/PyMVPA.git
> unzip master
> cd PyMVPA-master
>
> #Build libsvm
> sudo make 3rd
>
> #Build PyMVPA itself
> sudo python setup.py build_ext
>
> #And install
> sudo python setup.py install
>
> If you get a locale error
> ValueError: unknown locale: UTF-8
> Either run these commands before running python or add them to your
> bash_profile or .profile
> export LC_ALL=en_US.UTF-8
> export LANG=en_US.UTF-8
>
>
> On 22 June 2016 at 22:18, Yun-Ta Tsai <andytsai at mit.edu> wrote:
>
>> When i run the installation command:
>> $ sudo port install py27-pymvpa +scipy +nibabel +hcluster + libsvm +
>> matplotlib + pywavelet
>>
>> I get the following error:
>> --->  Computing dependencies for py27-pymvpa
>> --->  Building py27-pymvpa
>> Error: org.macports.build for port py27-pymvpa returned: command
>> execution failed
>> Please see the log file for port py27-pymvpa for details:
>>
>> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-pymvpa/py27-pymvpa/main.log
>> To report a bug, follow the instructions in the guide:
>>     http://guide.macports.org/#project.tickets
>> Error: Processing of port py27-pymvpa failed
>>
>> I've attached the log file. Would appreciate any help.
>>
>> Best,
>> Andy Tsai
>> Computational Biologist at UCSF School of Medicine
>>
>> _______________________________________________
>> Pkg-ExpPsy-PyMVPA mailing list
>> Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
>>
>
>
> _______________________________________________
> Pkg-ExpPsy-PyMVPA mailing list
> Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/pkg-exppsy-pymvpa
>
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