[pymvpa] Running Searchlight on ETH cluster

Pegah Kassraian Fard pegahkf at gmail.com
Sat Oct 28 09:36:48 UTC 2017


Dear pymvpa developers,

As you know running a whole brain searchlight can be quite time-consuming.
So we are currently trying to run it on a cluster of our university (ETH
Zurich). However, IT support is having trouble installing mvpa and
corresponding modules. Apparently, they get the following error message:

/cluster/apps/gcc/4.8.2/bin/gcc -pthread -shared
build/temp.linux-x86_64-3.6/mvpa2/clfs/libsmlrc/smlr.o
-L/cluster/apps/python/3.6.0/x86_64/lib64 -lm -lpython3.6m *-o
build/lib.linux-x86_64-3.6/mvpa2/clfs/libsmlrc/smlrc.cpython-36m-x86_64-linux-gnu.so
<http://smlrc.cpython-36m-x86_64-linux-gnu.so>*
-L/cluster/apps/libsvm/3.2.2/x86_64
-lsvm
/usr/bin/ld: cannot find -lsvm


Can you help? As far as I understand the cluster-admin was building from
source. Any feedback is much appreciated,

Pegah
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