[pymvpa] segmentation fault while running unit test

Valentin Haenel valentin.haenel at gmx.de
Mon Apr 27 07:13:47 UTC 2009


Hi,

just two quick followup questions:

1) did anyone manage or try to reproduce this?

2) what system do you run your unittests on?



* Valentin Haenel <valentin.haenel at gmx.de> [090408]:
> i tried to run the test suite today on one of cluster nodes and encountered a
> seg-fault. I then spent a while tracking it down with our sys-admin (tiziano
> zito). So here is the full story:
> 
> I am running this on a lenny with build-deps for python-mvpa installed, and the
> pymvpa version i am using is from the master branch of the git repo.
> 
> We found out that the segfault is caused in:
> 
> testERNiftiDataset (mvpa.tests.test_niftidataset.NiftiDatasetTests)
> 
> and here are a few lines that when copied and pasted into your ipython should
> reproduce the error:
> 
> import os
> import mvpa
> from mvpa import pymvpa_dataroot
> from mvpa.datasets.nifti import *
> tssrc = os.path.join(pymvpa_dataroot, 'bold')
> origsamples = getNiftiFromAnySource(tssrc).data
> origsamples
> 
> Any ideas?
> 
> cheers
> 
> V-
> 



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