[pymvpa] What's up with NameError message?
Glen Lee
glen.lee02 at gmail.com
Fri Mar 4 15:27:42 UTC 2011
Here is what I got after typing those two lines.
--------------------------------------------
Current date: 2011-03-04 10:24
PyMVPA:
Version: 0.4.5
Path: /usr/lib/pymodules/python2.6/mvpa/__init__.pyc
Version control (GIT):
GIT information could not be obtained due
"/usr/lib/pymodules/python2.6/mvpa/.. is not under GIT"
SYSTEM:
OS: posix Linux 2.6.32-27-generic #49-Ubuntu SMP Thu Dec 2
00:51:09 UTC 2010
Distribution: Ubuntu/10.04/lucid
EXTERNALS:
Present: cPickle, ctypes, good scipy.stats.rv_discrete.ppf, griddata,
gzip, libsvm, libsvm verbosity control, matplotlib, mdp, mdp ge 2.4, nifti,
nifti ge 0.20090205.1, numpy, pylab, pylab plottable, pywt, pywt wp
reconstruct, reportlab, running ipython env, scipy, sg ge 0.6.4,
sg_fixedcachesize, shogun, shogun.krr, shogun.mpd
Absent: atlas_fsl, atlas_pymvpa, elasticnet, glmnet, good
scipy.stats.rdist, hcluster, lars, lxml, nose, openopt, pywt wp reconstruct
fixed, rpy, shogun.lightsvm, shogun.svrlight, weave
Versions of critical externals:
ctypes : 1.1.0
matplotlib : 0.99.1.1
nifti : 0.20100607.1
numpy : 1.3.0
pywt : 0.1.7
scipy : 0.7.0
shogun : v0.9.1_r4481_2009-11-16_10:14_
Matplotlib backend: TkAgg
RUNTIME:
PyMVPA Environment Variables:
PYTHONPATH : ".:/jet/kimberg/pymvpa"
PyMVPA Runtime Configuration:
[externals]
have griddata = yes
have good scipy.stats.rdist = no
have pylab plottable = yes
have pywt wp reconstruct = yes
have mdp = yes
have lxml = no
have running ipython env = yes
have sg_fixedcachesize = yes
have elasticnet = no
have shogun.mpd = yes
have matplotlib = yes
have pywt wp reconstruct fixed = no
have scipy = yes
have reportlab = yes
have openopt = no
have libsvm = yes
have shogun.krr = yes
have nifti ge 0.20090205.1 = yes
have nose = no
have weave = no
have atlas_fsl = no
have ctypes = yes
have hcluster = no
have sg ge 0.6.4 = yes
have good scipy.stats.rv_discrete.ppf = yes
have libsvm verbosity control = yes
have mdp ge 2.4 = yes
have shogun.svrlight = no
have rpy = no
have shogun = yes
have glmnet = no
have lars = no
have nifti = yes
have atlas_pymvpa = no
have cpickle = yes
have numpy = yes
have pylab = yes
have shogun.lightsvm = no
have pywt = yes
have gzip = yes
[general]
verbose = 1
Process Information:
Name: ipython
State: R (running)
Tgid: 8101
Pid: 8101
PPid: 8100
TracerPid: 0
Uid: 2136 2136 2136 2136
Gid: 1001 1001 1001 1001
FDSize: 64
Groups: 1001
VmPeak: 393752 kB
VmSize: 393724 kB
VmLck: 0 kB
VmHWM: 65644 kB
VmRSS: 65644 kB
VmData: 57724 kB
VmStk: 200 kB
VmExe: 2160 kB
VmLib: 63240 kB
VmPTE: 728 kB
Threads: 2
SigQ: 0/16382
SigPnd: 0000000000000000
ShdPnd: 0000000000000000
SigBlk: 0000000000000000
SigIgn: 0000000001001000
SigCgt: 0000000180000002
CapInh: 0000000000000000
CapPrm: 0000000000000000
CapEff: 0000000000000000
CapBnd: ffffffffffffffff
Cpus_allowed: ff
Cpus_allowed_list: 0-7
Mems_allowed: 00000000,00000001
Mems_allowed_list: 0
voluntary_ctxt_switches: 752
nonvoluntary_ctxt_switches: 130
In [4]: can't invoke "event" command: application has been destroyed
while executing
"event generate $w <<ThemeChanged>>"
(procedure "ttk::ThemeChanged" line 6)
invoked from within
"ttk::ThemeChanged"
invalid command name "71539040callit"
while executing
"71539040callit"
("after" script)
On Fri, Mar 4, 2011 at 10:22 AM, Yaroslav Halchenko
<debian at onerussian.com>wrote:
> no problem -- start python, type
>
> import mvpa
> mvpa.wtf()
>
> send me the output -- better to the mailing list
>
> cheers,
>
> On Fri, 04 Mar 2011, Glen Lee wrote:
>
> > Yes. That's the tutorial that I downloaded.
> > I've tried mvpa.wtf(), but nothing happened.
> > Where should I type? in the shell or in the ipython?
> > Sorry, I'm also novice for linux & python.
>
> > On Thu, Mar 3, 2011 at 9:30 PM, Yaroslav Halchenko
> > <[1]debian at onerussian.com> wrote:
>
> > and what tutorial version do you use?
> > this one?
> > [2]
> http://data.pymvpa.org/datasets/tutorial_data/tutorial_data-0.2.t
> > ar.gz
> > still, just to make sure (if it is the correct tutorial):
> > what is the output of mvpa.wtf()?
>
> > On Thu, 03 Mar 2011, Glen Lee wrote:
>
> > > Hi Yarik,
> > > It's the most recent version 0.6.
> > > Where can I cget the tutorial for this version?
> > > On Thu, Mar 3, 2011 at 7:14 PM, Yaroslav Halchenko
>
> > > <[1][3]debian at onerussian.com> wrote:
> > > what version of PyMVPA do you have available
> > > just provide output of
> > > mvpa.wtf()
> > > to possibly eliminate other questions.
> > > if it is PyMVPA 0.4.x -- then it is the 'stable' one, and the
> > > tutorial was crafted for the yet-to-be-released 0.5->0.6
> series,
> > so
> > > you
> > > would need to get that one
> > > On Thu, 03 Mar 2011, Glen Lee wrote:
> > > > Hello,
> > > > Thanks for your answer for the previous inquiry.
> > > > I'm stuck again in the very next command of the tutorial
> page
> > and
> > > again
> > > > have no clue about this error.
> > > > Your help would be appreciated.
> > > > -Glen
> > > > In [3]: ds=get_haxby2001_data()
> > > > ------------------------------
> > > > ---------------------------------------------
> > > > NameError Traceback (most
> > recent
> > > call
> > > > last)
> > > > /home/Glen/Downloads/tutorial_data/<ipython console> in
> > <module>()
> > > > /home/Glen/Downloads/tutorial_data/tutorial_lib.pyc in
> > > > get_haxby2001_data(path, roi)
> > > > 42 def get_haxby2001_data(path=None, roi='vt'):
> > > > 43 if path is None:
> > > > ---> 44 ds = get_raw_haxby2001_data(roi=roi)
> > > > 45 else:
> > > > 46 ds = get_raw_haxby2001_data(path, roi=roi)
> > > > /home/Glen/Downloads/tutorial_data/tutorial_lib.pyc in
> > > > get_raw_haxby2001_data(path, roi)
> > > > 37 return ds
> > > > 38 else:
> > > > ---> 39 return load_datadb_demo_blockfmri(path=path,
> > > roi=roi)
> > > > 40
> > > > 41
> > > > NameError: global name 'load_datadb_demo_blockfmri' is not
> > defined
> > > > _______________________________________________
> > > > Pkg-ExpPsy-PyMVPA mailing list
>
> > > > [2][4]Pkg-ExpPsy-PyMVPA at lists.alioth.debian.org
>
> > [3][5]
> http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pym
> > vpa
> --
> =------------------------------------------------------------------=
> Keep in touch www.onerussian.com
> Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic
>
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