[pymvpa] custom cross-validation procedure: train on individual blocks, test on averaged blocks?

e c ilangobi at yahoo.com
Wed Mar 7 21:47:17 UTC 2012


after the warning message,

the output of dataset.summary() is:

"Dataset: 54x130 at float64, <sa: blocks,censor,TR,chunks,TR2,targets>, <a: mapper>\nstats: mean=0.0785296 std=0.720478 var=0.519089 min=-2.79133 max=3.00064\n\nCounts of targets in each chunk:\n  chunks\\targets  HI  HO\n                 --- ---\n       0.0        3   2\n       1.0        3   3\n       2.0        3   3\n       3.0        3   3\n       4.0        2   3\n       5.0        3   2\n       6.0        3   3\n       7.0        3   2\n       8.0        3   3\n       9.0        2   2\n\nSummary for targets across chunks\n  targets mean  std min max #chunks\n    HI     2.8  0.4  2   3     10\n    HO     2.6 0.49  2   3     10\n\nSummary for chunks across targets\n  chunks mean std min max #targets\n    0     2.5 0.5  2   3      2\n   
 1      3   0   3   3      2\n    2      3   0   3   3      2\n    3      3   0   3   3      2\n    4     2.5 0.5  2   3      2\n    5     2.5 0.5  2   3      2\n    6      3   0   3   3      2\n    7     2.5 0.5  2   3      2\n    8      3   0   3   3      2\n    9      2   0   2   2      2\nSequence statistics for 54 entries from set ['HI', 'HO']\nCounter-balance table for orders up to 2:\nTargets/Order O1     |  O2     |\n     HI:      14 14  |  13 15  |\n     HO:      14 11  |  15  9  |\nCorrelations: min=-0.26 max=0.18 mean=-0.019 sum(abs)=6.6"


here's another instance (different targets):

"Dataset: 57x130 at float64, <sa: blocks,censor,TR,chunks,TR2,targets>, <a: mapper>\nstats: mean=0.00158443 std=0.707033 var=0.499896 min=-3.96051 max=2.82313\n\nCounts of targets in each chunk:\n  chunks\\targets  VI  VO\n                 --- ---\n       0.0        3   3\n       1.0        2   2\n       2.0        3   3\n       3.0        3   3\n       4.0        3   2\n       5.0        3   3\n       6.0        3   3\n       7.0        3   3\n       8.0        3   3\n       9.0        3   3\n\nSummary for targets across chunks\n  targets mean std min max #chunks\n    VI     2.9 0.3  2   3     10\n    VO     2.8 0.4  2   3     10\n\nSummary for chunks across targets\n  chunks mean std min max #targets\n    0      3   0   3   3      2\n   
 1      2   0   2   2      2\n    2      3   0   3   3      2\n    3      3   0   3   3      2\n    4     2.5 0.5  2   3      2\n    5      3   0   3   3      2\n    6      3   0   3   3      2\n    7      3   0   3   3      2\n    8      3   0   3   3      2\n    9      3   0   3   3      2\nSequence statistics for 57 entries from set ['VI', 'VO']\nCounter-balance table for orders up to 2:\nTargets/Order O1     |  O2     |\n     VI:      12 17  |  12 16  |\n     VO:      17 10  |  17 10  |\nCorrelations: min=-0.26 max=0.37 mean=-0.018 sum(abs)=7"

thanks!
-edmund
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