[pymvpa] custom cross-validation procedure: train on individual blocks, test on averaged blocks?
Yaroslav Halchenko
debian at onerussian.com
Wed Mar 7 23:29:57 UTC 2012
oy -- would you mind doing
print dataset.summary()
otherwise my visual system is a bit confused, although catches that
conditions seems to be not equally represented across chunks
> after the warning message,
> the output of dataset.summary() is:
> "Dataset: 54x130 at float64, <sa: blocks,censor,TR,chunks,TR2,targets>, <a:
> mapper>\nstats: mean=0.0785296 std=0.720478 var=0.519089 min=-2.79133
> max=3.00064\n\nCounts of targets in each chunk:\n chunks\\targets HI
> HO\n --- ---\n 0.0 3 2\n 1.0
> 3 3\n 2.0 3 3\n 3.0 3 3\n 4.0
> 2 3\n 5.0 3 2\n 6.0 3 3\n 7.0
> 3 2\n 8.0 3 3\n 9.0 2 2\n\nSummary for
> targets across chunks\n targets mean std min max #chunks\n HI
> 2.8 0.4 2 3 10\n HO 2.6 0.49 2 3 10\n\nSummary for
> chunks across targets\n chunks mean std min max #targets\n 0 2.5
> 0.5 2 3 2\n 1 3 0 3 3 2\n 2 3 0 3
> 3 2\n 3 3 0 3 3 2\n 4 2.5 0.5 2 3
> 2\n 5 2.5 0.5 2 3 2\n 6 3 0 3 3 2\n
> 7 2.5 0.5 2 3 2\n 8 3 0 3 3 2\n 9
> 2 0 2 2 2\nSequence statistics for 54 entries from set ['HI',
> 'HO']\nCounter-balance table for orders up to 2:\nTargets/Order O1 |
> O2 |\n HI: 14 14 | 13 15 |\n HO: 14 11 | 15 9
> |\nCorrelations: min=-0.26 max=0.18 mean=-0.019 sum(abs)=6.6"
> here's another instance (different targets):
> "Dataset: 57x130 at float64, <sa: blocks,censor,TR,chunks,TR2,targets>, <a:
> mapper>\nstats: mean=0.00158443 std=0.707033 var=0.499896 min=-3.96051
> max=2.82313\n\nCounts of targets in each chunk:\n chunks\\targets VI
> VO\n --- ---\n 0.0 3 3\n 1.0
> 2 2\n 2.0 3 3\n 3.0 3 3\n 4.0
> 3 2\n 5.0 3 3\n 6.0 3 3\n 7.0
> 3 3\n 8.0 3 3\n 9.0 3 3\n\nSummary for
> targets across chunks\n targets mean std min max #chunks\n VI 2.9
> 0.3 2 3 10\n VO 2.8 0.4 2 3 10\n\nSummary for chunks
> across targets\n chunks mean std min max #targets\n 0 3 0 3
> 3 2\n 1 2 0 2 2 2\n 2 3 0 3 3
> 2\n 3 3 0 3 3 2\n 4 2.5 0.5 2 3 2\n
> 5 3 0 3 3 2\n 6 3 0 3 3 2\n 7
> 3 0 3 3 2\n 8 3 0 3 3 2\n 9 3 0
> 3 3 2\nSequence statistics for 57 entries from set ['VI',
> 'VO']\nCounter-balance table for orders up to 2:\nTargets/Order O1 |
> O2 |\n VI: 12 17 | 12 16 |\n VO: 17 10 | 17 10
> |\nCorrelations: min=-0.26 max=0.37 mean=-0.018 sum(abs)=7"
> thanks!
> -edmund
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